10X Visium - Human Intestine Cancer

Gene expression library of Human Intestinal Cancer (Visium FFPE) using the Human Whole Transcriptome Probe Set

10x_datasets

Info

10x_datasets/human_intestinal_cancer_visium
10x Genomics (2022)
78.32 MiB
20-08-2024
2660 × 14292

Used in

Description

5 µm section from Human Intestinal Cancer. FFPE tissue purchased from BioIVT Asterand Human Tissue Specimens. Libraries were prepared following the Visium Spatial Gene Expression Reagent Kits for FFPE User Guide (CG000407 Rev A).

Preview

dataset is an AnnData object with n_obs × n_vars = 2660 × 14292 with slots:

Reference

Name Description Type Data type Size
var
feature_id Unique identifier for the feature, usually a ENSEMBL gene id. vector object 14292
feature_name A human-readable name for the feature, usually a gene symbol. vector object 14292
layers
counts Raw counts sparsematrix float32 2660 × 14292
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the obs.dataset_id field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

References

10x Genomics. 2022. “Human Intestine Cancer (FPPE).” https://www.10xgenomics.com/datasets/human-intestine-cancer-1-standard.