DBiT-seq - Mouse Brain (E10)

High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue

zenodo_spatial

Info

zenodo_spatial/dbitseq/mouse_e10_brain
Liu et al. (2020)
6.44 MiB
23-09-2024
1789 cells × 5725 genes

Used in

Description

Gene expression library of an E10 whole mouse embryo tissue (brain in early-stage organogenesis) profiled using DBiT-seq.

Preview

dataset is an AnnData object with n_obs × n_vars = 1789 × 5725 with slots:

Reference

Name Description Type Data type Size
var
feature_name A human-readable name for the feature, usually a gene symbol. vector object 5725
layers
counts Raw counts densematrix float32 1789 × 5725
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the obs.dataset_id field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

References

Liu, Yang, Mingyu Yang, Yanxiang Deng, Graham Su, Archibald Enninful, Cindy C. Guo, Toma Tebaldi, et al. 2020. “High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue.” Cell 183 (6): 1665–1681.e18. https://doi.org/10.1016/j.cell.2020.10.026.