Slide-seqV2 - Mouse Olfactory Bulb Puck

Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2

zenodo_spatial

Info

zenodo_spatial/mouse_olfactory_bulb_puck_slideseqv2
Stickels et al. (2020)
37.34 MiB
20-08-2024
21376 × 4163

Used in

Description

Gene expression library of mouse olfactory bulk puck profiled using Slide-seq V2.

Preview

dataset is an AnnData object with n_obs × n_vars = 21376 × 4163 with slots:

Reference

Name Description Type Data type Size
var
feature_name A human-readable name for the feature, usually a gene symbol. vector object 4163
layers
counts Raw counts sparsematrix int64 21376 × 4163
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the obs.dataset_id field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

References

Stickels, Robert R., Evan Murray, Pawan Kumar, Jilong Li, Jamie L. Marshall, Daniela J. Di Bella, Paola Arlotta, Evan Z. Macosko, and Fei Chen. 2020. “Highly Sensitive Spatial Transcriptomics at Near-Cellular Resolution with Slide-seqV2.” Nature Biotechnology 39 (3): 313–19. https://doi.org/10.1038/s41587-020-0739-1.